NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_102628378

Scaffold Ga0310686_102628378


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_102628378 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5125
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051804Metagenome / Metatranscriptome143Y
F069867Metagenome123Y
F102903Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1026283785F051804AGGMTKQVVSTTLMIEILGPKDASAKRIRFVEDILRNCIKTLDKDFRKSRIPQMKGFSLRPEKELRKRRGR
Ga0310686_1026283786F069867AGGAGGMSQRIYEYPEVIGKTVAKVTVANESDWHNISVKFTDNTAIHFSIRPLMHFEPEHIDWTTGNGKILRSYPFVRQTEG
Ga0310686_1026283788F102903AGGAMPKPWVELMEARGRTVKRMNVAYDEEYVAVEVEFEDGHSMNVDIIPAVQIRPQFQHVGTGDARIIRNYKSRISVAAD
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