Basic Information | |
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Taxon OID | 3300031708 Open in IMG/M |
Scaffold ID | Ga0310686_103002073 Open in IMG/M |
Source Dataset Name | FICUS49499 Metagenome Czech Republic combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 46341 |
Total Scaffold Genes | 52 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (63.46%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000249 | Metagenome / Metatranscriptome | 1459 | Y |
F001548 | Metagenome / Metatranscriptome | 673 | Y |
F001709 | Metagenome / Metatranscriptome | 648 | Y |
F003124 | Metagenome / Metatranscriptome | 506 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0310686_1030020733 | F003124 | N/A | MALAKRSRSKSTSAKHVRRSVTLPPKIAKHVETLAKERDLSDNRVLVELIEQGIEARQQKEKAFFQLAERFRAADDPEQVKQLGNQLGRFVFGE |
Ga0310686_10300207341 | F001548 | AGAAGG | MLSVRIILWTTAMSYTGFILTNQGLRTFNGVSMTEAFLGALAGFFLAIMFRLREKRRQRPAFVAHSVAQIYPEWGTSPENRD |
Ga0310686_10300207345 | F000249 | GGAGG | MKTLAWIALPLLMLIPIFGRAQGEPVPVPAVQASGPQEGRMFFPKDTFWGWAQFDLAPPHNEIDPNLCAGNAGQYGGVNAPCSMFGRYMLSGMLEVRPFGRGQLRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGVEHSWGGGIFIGKGFEFRVTQHFLFDRLGARDTYLGVADLGNNGPWGRYMTVGVRKSFGTRRW |
Ga0310686_10300207346 | F001709 | N/A | MPQEVSVSYQAIKSKVYRLIDALVVGEKSELEVQESVRRWWELIHPADRPIAQKYLMAVLERSCQALDAVEEGLMEVTHHEAVRPSESAKTLKLVDRIVKQNAKQASFSTTA |
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