NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_103738472

Scaffold Ga0310686_103738472


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_103738472 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)147132
Total Scaffold Genes118 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)91 (77.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002201Metagenome / Metatranscriptome584Y
F003398Metagenome / Metatranscriptome489Y
F075408Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10373847246F003398N/AMVTCCRRAEPADAALAEAYNGNIMTSHNIESPSVSEICAQVKHLGYAVSGQIRLYGEEFEVLSDPFPEDDGIAVRVKTKKSSRIRVLQLPATVLQSVKGRGTRAA
Ga0310686_10373847257F075408GGAGLEWRKLVCGVMIVVVPVSLFAQVTDRAMLHSDGGTWLNGNPAPESSAIFMDALIQTPKEHSAKIDAEGSVATVQPETIVQFEGDELVLDHGGLQLTTERQMRVRVNCITVTPINAAWTQYDVTDVDGRVKVVAYKNDVRIHYRGSLLQKSKQGGASSDVIVHEGEQATRDERCGAAIKPADGIAADGEWLNSTAAKVGGSFIVAGLICLGVCRSPNPISPTKP
Ga0310686_10373847290F002201AGGGGGMWTQEVAPERLAELFHHYHQALSPEASNKNSEGRESWKEVPQQEKSRLVAAARLALLELESMASGRAKSRQYFAQPGEAEWGC
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