NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_104647170

Scaffold Ga0310686_104647170


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_104647170 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1322
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F019896Metagenome / Metatranscriptome227Y
F025071Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1046471701F019896N/ALKFDRSLWAFQNAQLGMEYASRLKTYDAPIPVKITQCEPGVAEVGPGEARIGLIALQLPQVNPNAKKTQPTVLKILFPIDRAGNLTATLVL
Ga0310686_1046471702F001473GAGMESEYQTVGQMYERLRLMIRQRNDTGFRLAMTDAVLEPRNPFEPANKRRPKSVVAITLILVLVLALIFLYFSFHHAR
Ga0310686_1046471704F025071GAGGMIQHSENSRREMTNAEAGVVGAVLGFGLIALLLYLAVERYHIRKEQLAEAGLYLFVIAAAVIAPVLRKFTTRGKRNKRPPFVIPARKDERAIESAWNQNAVL
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