NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310686_104687921

Scaffold Ga0310686_104687921


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_104687921 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116910
Total Scaffold Genes104 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)70 (67.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000901Metagenome / Metatranscriptome844Y
F001772Metagenome / Metatranscriptome637Y
F006150Metagenome / Metatranscriptome380Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10468792110F006150AGCAGMERSRLWRIAAAGLVFSMLVALCALAGGEASVEELKDRFSKASVEDRPPLCIHICERQLNNANKFYAAGDVEKWQAALADVAAFAEQARDYAIQSHKHEKPSEIAVRKMARKLADHKHTVAHDDQKQVQDTIDRLERVRDDLLAAMFRNGGKS
Ga0310686_10468792135F001772AGGAMDDNRRDDNRVIVKRRHYQKFKLMRKSILLILTAALLVIAGYSFGSRNATVAHASAPIQGTVPKSYGRLVTAISDQIGTGLIFEDTDGVIRFVAMTGMKEGELARYDQTPTHGGIPKSYGHLVAAVANPTGTGLVFEDSQGVIRFVTITGKDEGELTRN
Ga0310686_1046879216F000901GGAGMAANAAAAYGMYPQNAALSDIVHTLNKAGFGNEDICMMLSPTHPIASLVRDANFFNSERDSDAVTAGLIGWLSEFGAVIIPTVGFFIRSQAFFHALMTSRDDPGHFGNTRALVGLGFSKLEAQRFEKQLCHFGTLVYVSCRENAKSLWAREVLHNAGAQEAATLEEIVAETLKVAAVA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.