NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0310686_105152413

Scaffold Ga0310686_105152413


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_105152413 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8039
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000885Metagenome / Metatranscriptome849Y
F076450Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10515241313F000885AGGAGMASAKTVFIGEVTQVAGIASAVAGVVLSLHHWPAAAALIGGGVAFYIGKRLRAQ
Ga0310686_1051524132F000188GGAGGMSVKPELAFDVCWEVYRGAREVLETKRGISALNWKDTGKFLWRPDVRPRLNEWVADFALAGQAALDGPDWASRMVMFRVYYLGLAPYENARHFLGLSEHSWVNWSEQIRHRCGAEMLRRGMFPPRKYFATGE
Ga0310686_1051524136F076450N/AMRTDPQGRAIQIGRYLNAPTALAVGTASASIQLNQNLHYRLWPSVDMFFQFGAPGVLANTNSHPATGKLDYLHYTDDTNTTLAAVVSSGTGVLFVSEIDTQGA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.