NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_105456163

Scaffold Ga0310686_105456163


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_105456163 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1360
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005268Metagenome / Metatranscriptome406Y
F025325Metagenome / Metatranscriptome202Y
F072127Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1054561631F072127N/ATAILREVRWGLVWRDFVLEDGRVIPEHRISGCPQPQTWRKISEVTDQEREECEERLLSMAGAGLDPRERDQPFWAELNQYLAYTYLRFKPAGSKIQDQDKE
Ga0310686_1054561632F005268GAGGVNRSDDEDDEPDQLQVWRVLSEARLVEIRLDEFAERISDVKRIVTGRLFDLLNFNTGVQERESAAYSLGTLKGLELKVLANAPKPPDPSEV
Ga0310686_1054561633F025325GAGGMLSDGPKKRLEKTWEELVSAASMETDPEKLATMLEEIFAALEERERTLSLPQNPSAFCERPTET
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