Basic Information | |
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Taxon OID | 3300031708 Open in IMG/M |
Scaffold ID | Ga0310686_105918441 Open in IMG/M |
Source Dataset Name | FICUS49499 Metagenome Czech Republic combined assembly |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 56549 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (70.31%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
Source Dataset Sampling Location | ||||||||
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Location Name | Czech Republic: South Bohemian Region | |||||||
Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001177 | Metagenome / Metatranscriptome | 756 | Y |
F035852 | Metagenome / Metatranscriptome | 171 | Y |
F042487 | Metagenome / Metatranscriptome | 158 | N |
F056132 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0310686_10591844112 | F056132 | GGA | MKKLLSLGLIMWSSAANAQNAPATSTATQDQGQARQFGMLVGGTATQYDLCVKKGFLAKSDQSAEEAAKSIFEKMRANGGPDQSAYVQEGWDMMKKEIFSHESFYTQEKCAGVGKQWAKIVATMRKK |
Ga0310686_10591844136 | F001177 | GGAGG | MAIKRPTKGKGTPSHKPVASAPLRHVDVKVPQQMVLGQVYVGWLCKNRSCGRVIAIAASAPGGKAATDFDDQLTAIKCPHCQDENLYRWSARSEQNYALSGSP |
Ga0310686_10591844141 | F035852 | N/A | MLNASVGLRSIWKTAADLETYDTLRGLSVWPSLNKAIEAQIARMAVANENPNFEALATMTRLRAGQSLRFVLTWSFWLAVSLTFLVMTGSVAIIPYAHEIADTHGLKWIHALNLAGVGAFALCMLSYMFVIYAALVSRYGKHIIQPRIDALTRGS |
Ga0310686_10591844155 | F042487 | AGAAGG | MNKWSFVAASAALAVAGMGASVSAQAHPYLTVGVDVPAVAVVGPFGRAPVYCGPYCYEHGRYWRRDYDRYRFDRFPRERWYRR |
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