NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_106238461

Scaffold Ga0310686_106238461


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_106238461 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)88500
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (84.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F001709Metagenome / Metatranscriptome648Y
F004329Metagenome / Metatranscriptome443Y
F017346Metagenome / Metatranscriptome241Y
F019610Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10623846135F000249GGAGGMKTLAWILVFPLLICTLTAAQSSPSASSPQDTGTKTQDLGTKAEDRMFFPHDMFWGWAQFDIAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGELRRFMVFGAPAFLFGKTIPQTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARDTHLGVADLGNNGPWGRYATVGVRKSFGTRRW
Ga0310686_10623846136F001709GGAGMPQEVSVSYQAIKSKVYRLIDTLVVGEKSEVEVQESIRRWWELIHPADRPIAQKYLLLVLGRSFQALDAIEEGLTDATNHEALQTYHSAKEFKLVERVVKQSGRSAIFSNSI
Ga0310686_10623846146F017346N/AMGIFDSFRKEEVTGSKVLVGQLSPKFDEHFKSDLRVYKRFYPAASGATFISVAELRGAAGHNYDVLHLFCDMDGSGVIADASGDRITGTELLKAAVDSGVKLLWMGNDNPQESYDAGFKTKGLKINVVLTLRRLGSNTSLFLDSLLAKMQAGDTFAKAWSVASQPEGKSVQPDVPHTISSLGRGSVILK
Ga0310686_10623846148F019610GAGGMRSYLAKLTPKAQMLLAIPLIAITYPVVMILLPAIIRALLPSVVRSVLSLL
Ga0310686_1062384615F004329GAGMEPSLRREHPSKGAAIPFVAAIAIVLLCAFQFGDRNELNKMPFAKVQPLASDLEKAERLAKQGNIDLFAGQHEPGKVVTLRGEVTDANCYLGTHIHAYDHAFCAKLCAAAGGPLVFIVDQDSEVYVVMSERNGIRLPDNVLDRIGVPGIVVRGKVRSTDGVRALAIEGLAE
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