NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_115793326

Scaffold Ga0310686_115793326


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_115793326 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23680
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008704Metagenome / Metatranscriptome329Y
F017104Metagenome / Metatranscriptome242Y
F052336Metagenome / Metatranscriptome142Y
F087101Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_11579332622F052336GGAGLTIAELIAEQRRRLGSRNLVERFAAATVIPAVLAERLAGLADRQVGQLLLDEVWPGLSPLAPESTICLHAADRLRGQMKQSPTCPKCGSEMIRHIGIDAPDFLECAVLNCGLRIQET
Ga0310686_11579332623F087101N/AVRQTTVHAQKQVPLRVKGEAVKYLSSLPQFHGIPDESLIRIAERRTGLNVPDRWIAVALIVGNRVPIPVPAPDGRPQGKPSEATTPAKLIAITGGRIAR
Ga0310686_11579332626F008704GGAGGMDYFHVFVLSSLDLDRSGDVKSRNIAVTFDLFEAEDHRNKGVENDYEVFVVPCDWPEDAARSELISAMRGFRSIVKQMEDEALR
Ga0310686_1157933265F017104AGGAGMSRYREIKKATAEVVGVRVVMKSSTKKAHEAIRDVIVASPALSYRQIADLMGCSRWLIYRVAVEFDVRRPRGAGAAARQPEIGKSIREHL
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