NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_116200296

Scaffold Ga0310686_116200296


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_116200296 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15113
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001010Metagenome / Metatranscriptome807Y
F002004Metagenome / Metatranscriptome605Y
F002288Metagenome / Metatranscriptome574Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1162002962F002288GGAMGEADGVHKRRMFRWPKEARLLVREYKRRTGNGQKPGEFDRRTLVTRLAELTGNPRDACLRFLRELGVNEKRPYREWTKPEQQRLLDLITTMPVEEAAKILRRPAGSMRSMLHRLGMGGKTGREWFTKFSLSRALHTRPDEIQKWIDLGWLKLRSRTAAGTRASIIHPDDFCEFVKEHGRAVASRRLSYDALRFVQNYVFPPSHAQLLSVRGTYKQHDPDDETPNAESQSTGGSEEGGGHEG
Ga0310686_1162002966F001010AGGCGGVRLIFSGIFSALRSGYLAALYNTGDMAVRIEMQNTGCPRVRGEIVAIIEHVLSDRPGDWRVSIVGSQANDNWEMKVEGPAGFERSYTLVGGAGEHEPAALGNLVVKLLPARKP
Ga0310686_1162002967F002004GAGMRTLPNSRSLDQHISRALNQIRKPSTAEEITELLNRDLEPEDRPFQTKEVAEWLRNTEGISLTLYWSRTRPRR
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