NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_118047918

Scaffold Ga0310686_118047918


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_118047918 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9864
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003696Metagenome / Metatranscriptome473Y
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0310686_11804791811F014350N/AMATQVNPLEEHAAGAKVGRRGSKRKEQQAEQQAPAGTDFSYAGQESDPQQDLDTLENQADAPVQGSYLREKNGYDALSPEQKTACDKDFESYLGRLTRPIDARDGETRQDIIPRAKKEYCAVRQEHTAHHREMAKTMLASKINCLNSEYPRNSFSLKNPDVAKEFLATAFYHNAAAAKGFTAFDKDVFAASKKAALREFSVLAASVETGGSATKEFNNTFALSIERPPIGAPSQNLRIAAEPLPKKREELAAIFGKCAWYHSKQSGRTPEEREQRRAARTKTTQELER
Ga0310686_11804791812F004581GGAGGMQHTEIYNGHARRFQQMARHIELSMTPQHQQKHGGPDPISINDITLATTLMNSVYGYPAGKQSVLALSAGLLPGEERSQTVRGLFRMTAACSEYDQTLTYTLLPLPGREIETANLLRTTAAYSIERAGAHSRQVPPSTRHPAELER
Ga0310686_1180479188F003696N/AMASARTELATLRNLLREADLILATTDLPEGRAVRCRELLRSAVMLTDDLLNSAKLPAAAVLGRKGGSQTAKRGSDYFRQLAAKRKVRGGGRPRKEAE
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