NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_118061845

Scaffold Ga0310686_118061845


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_118061845 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4756
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034634Metagenome / Metatranscriptome174Y
F066229Metagenome / Metatranscriptome127Y
F077539Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1180618452F077539GGAMTKMSAVLRIKAELALVEASRKLLRQPASVYTSPETRKYADTVSVVRKELVKLVGILADDTSERHWNVAARVAKCADYLAHIPSREVQDALLDMIKAHKVLQDVEEITF
Ga0310686_1180618454F034634GAGMLQITYLVKGLFGFAAISSFAGFVFHAVSGNSDMALICFVGIGGSAAMAWMFSAWQRA
Ga0310686_1180618457F066229GAGGMPEPTLKFSVTCPDCALESVSEIPIAVIAGGLLSGKSLRLYSNCHDRYWTATFTEREQLRKSLAMLKIDTHARCNSRHAEQPAPAAENLFLSTQT
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