NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_119198002

Scaffold Ga0310686_119198002


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_119198002 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5462
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016550Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1191980023F016550GGAGGMRTVTIRSCFFLCAIAFALAVAAFADDQEKATTEIKRITSISVDANMRSIVNRTMADMLKANRLDLVKERHEMNLNYGDLFLAQQLAARGGKMEDVAAQLKAGKTVFDIANAYRANWKEINSEAKKLNNKIDDSIEKYFSDTKKQTALNQADGYDAKADKVPADSDISKDDYADGQKRYQQLHDLTTAQLPTGDANTRNNTAGVAGPPVSQH
Ga0310686_1191980026F016550N/AMKTATIRLFILFCTVALSLAAFADDQEKATKEIKKITSISVDSNMRAIVNRTMADMLKAKRLDLVKERQDMNLNYGDLFLAQQLAASGVKMDDIAAQLKSGKTIFDIANANHANWKEINSEAKKLNKKIDDNIEKSFTDAKKQAALNMAEDYDAKADKVPADSNISKDEYAEAQARYTHLHEASGAALPTGDANTMNPGGVNAAGAPSPVAAAGKH
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