NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_119832408

Scaffold Ga0310686_119832408


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_119832408 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33053
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (83.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000272Metagenome / Metatranscriptome1408Y
F002015Metagenome / Metatranscriptome604Y
F017681Metagenome / Metatranscriptome239Y
F034646Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_11983240811F002015N/AMKNASVVSELLEPYDARLMRCYPISDRINHVANDDAEYSAPVELEIQNDLFS
Ga0310686_11983240827F017681GGAMSNIEHFPSGTTLHHAVMKAKELMPKQILSVPCTTCGAAIGKVCELHTGAPRSEPHRDRKLAAAEAMETKTGKR
Ga0310686_11983240835F000272GGAGGMSQTVAERTAEHIAESAHQASRATSAIADVIEEGVGVVRRAAKQGGDAAEEFLNETTKRLQRHLLLTFATTFATGLAAGTLIGWIIKRRQIRQNW
Ga0310686_11983240840F034646GGAMDSEATRTARIAVLQEEIEFIHFANELYWRQANPRDAAQAEYYRRQDRLEEIRSELAELQKA
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