Scaffold Ga0265342_10149554

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265342_10149554

Scaffold Ga0265342_10149554

Overview

Basic Information
Taxon OID	3300031712 Open in IMG/M
Scaffold ID	Ga0265342_10149554 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1297
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location Name	USA: Seattle, Washington
Coordinates	Lat. (^o)	47.6516	Long. (^o)	-122.3045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F060084	Metagenome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265342_101495541	F060084	GGAGG	MRNAGVSLSPVTAALEDLRSHFRAALAADPVGAYRDWFRAQEEVREHGDADTARALADDLWELMPALPFGAAEERARFFHNAAVFYGSPGPAADLARARLAFAVALDHFEGDGESGWHARALHNLATALSNLGASPAELSESVGLFTQALAWRTSEREIARGVTLHNLGLALRRLSELDPEREAAHLAGSAEALREAVAIRERL

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