NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307476_10000005

Scaffold Ga0307476_10000005


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000005 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)724250
Total Scaffold Genes686 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)475 (69.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004194Metagenome / Metatranscriptome449Y
F004531Metagenome / Metatranscriptome434Y
F006572Metagenome / Metatranscriptome370Y
F006876Metagenome / Metatranscriptome363Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_1000000517F004531AGGAGMGQEISVSYQAVKSKVYRLIDSLVEDDKSRDDVQESVKRWWKHIHPADRPIARKHLLSVLSKSTATLAAISGGLTELQDFEAHPPVRTETVPRLHTMPAPTTERMKASV
Ga0307476_10000005241F006572N/AMTHYPQSNSTHRAVRIKLQTTPALVKLSDGVRAKGRLQVISATGGLLQLPVAISEGDFVEVEFQTHSGGVNGMAEMLNPLRAGSGSVFQPFRFIALEDDAHQHLRMMVESVGDQTFSGMRSSQWNSPKS
Ga0307476_10000005269F004194GAGMKSFRIPFLTAAGVVFLLLSEIPVADGQLRWPRQRKQEIEVRLIALAEAYPRSSVFANDEVFVAEQELSKEESRFIKLVYDFLPYEPPLSDSGLNYSLVHKVQAVRDTTCDDSLWQMRSLMEQRRRAEQPNSGWKYAEESPIADLDRRQARLRCYRTTSDDYEKTEHQPTSEAPY
Ga0307476_10000005535F006876GGAGGMTELETKLNNILEEHQHESGLHMIGGRRRLIERLAQFVEEDVKQEQIIAQSSSREH
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.