NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10001644

Scaffold Ga0307476_10001644


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10001644 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13570
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000072Metagenome / Metatranscriptome2651Y
F001432Metagenome / Metatranscriptome696Y
F051804Metagenome / Metatranscriptome143Y
F069867Metagenome123Y
F094511Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_100016441F094511N/ALKDNEEIRPLSANRNTVKALERRGLISPGKGRDALTIAWRLKKK
Ga0307476_1000164419F001432GGAGGMLNKHYIRDGNRKIIGSVTTGFSDESGVVRREDNQIAGRTNDRFSTTRDAHGKLVSINSSDPGLLINQKK
Ga0307476_100016443F000072GAGMDVERIIDDIEQLQEMFEAPDIRPLSASDISAANRRHDETLAHSPWFRLWQRYGVCCRTESPVLRLGESES
Ga0307476_100016445F051804N/AVTKDKPVICTTLMVEVLGPKDASAKRIRFVEDILRNCIRTLDRDFRKSRIPQMRGFSLKPEPLRRKRKGSR
Ga0307476_100016446F069867GGAGVPHTIHEYPELAGKTVSKVTVTNESDWRSITVRFTDNTAIHFSIRPFVQIEPEHVDWRTGDGKLLRIYPFVREKRG
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