NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10012178

Scaffold Ga0307476_10012178


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10012178 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5407
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028922Metagenome / Metatranscriptome190Y
F054240Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_100121781F054240GGAMTFGRLVKSSALISLAAAVGIPQICPAQDSSGNQSWTASSQQGSPGGVVNPTRRNETHTEADGRVVDRTSVETLGQDGRYVPYSDTEKESHRINDTTVRSIERTFGRDSDGHRTLIQERQEESRSLPGGEHKVTRTVSNPDANGRLQVVQRELEDSKQVSPGVRVTNTTVITPDGNGGFSPAVQT
Ga0307476_100121783F028922AGGAGGMAPLIRSSILSRFLIVASCLPVCVPTPLALAQHPSNRTAGGAVHIPPPPILRAPIFHLPASAPRISVAPSAGALGTAGFRSPRRPIRPFPPVLVVYESPFLLRRPFWGLNSCWWGTCDLIWPWTLDYTAVSSPGPTSYVSQVYETPVYVYGEERPDVPQLFLKDGTILNVTDYWLIDDQLHFAMIEEDGTKPAEHVIPFEALDLQTTVDANTRRGFRFVLRNEPFEQYLRDHPEDPPPVVTPLHE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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