NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310813_10002265

Scaffold Ga0310813_10002265


Overview

Basic Information
Taxon OID3300031716 Open in IMG/M
Scaffold IDGa0310813_10002265 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11699
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (94.74%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011852Metagenome / Metatranscriptome286Y
F070071Metagenome / Metatranscriptome123N
F080214Metagenome115N
F082926Metagenome / Metatranscriptome113N
F087420Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0310813_1000226514F070071GAGGMLTIIGATLVAGTSAGFWYLLPRNGKEHTLVQNNGVGSMVTIVILTLFIVGVAVMCEGLL
Ga0310813_1000226516F080214AGGAMTADAGSRDPVATFGMARKKSRKSILLRFTEALKESRRRQAQRVIATYAHLLADRDTPDDNNHH
Ga0310813_1000226518F087420GGAGMGPKLGACTKRSAAGGAIALALSALSHAPASAAKPPYGNCVAVTKQEYDSAKKQHMLRTRYTEYVRTGLPGRRQYWYCR
Ga0310813_100022658F082926GGAGGMPDISATEHPEQSNIVTWKVISIGTAIVLVVFLFLWL
Ga0310813_100022659F011852N/AMPLFSYFVVMGPTLALALIYICDRIEPHGSPVPTSQIAGIAKPFKPEPERSPYTITGTNFAAAYKPVSARAAAEPKPSRRADSLPQQQPADAGDRNAPRWKAIAQNPIDALMSIH
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Institute for Fundamental Biomedical Research
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