NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310813_10082575

Scaffold Ga0310813_10082575


Overview

Basic Information
Taxon OID3300031716 Open in IMG/M
Scaffold IDGa0310813_10082575 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2456
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015492Metagenome / Metatranscriptome254Y
F027896Metagenome193Y
F036849Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0310813_100825753F027896AGGGGGMKKVVLLFIVAAFAVSPAMAATKQKKSKQTTEAEDIAKQHDNTLRALRDGLPLVLPSWSLPFYFGMHMDEKTAKTEKTKK
Ga0310813_100825754F036849GAGGMRKSGFILLPLILAGCASSSSWFYNDEPKPEPLTNQTQVAPDQAAPQGAPNRGNLSPAAAAAAPPEANENSGELMDCVTESCKINCSPKVAVRFRPKWCTRFKEPVVE
Ga0310813_100825755F015492N/AVVLALLCAGAAFQAGARAQQFDFGQVDSFESLGSGTQRGGAPPKTIVDDGERHTVLFTIIESNTEARIHWKSPDGEQTTTIRSPALRAFQTIGKFTIEAAGDENHSFKYGYVLLRLKNGKGAAEDRI
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