Scaffold Ga0310813_10533662

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310813_10533662

Scaffold Ga0310813_10533662

Overview

Basic Information
Taxon OID	3300031716 Open in IMG/M
Scaffold ID	Ga0310813_10533662 Open in IMG/M
Source Dataset Name	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1030
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	36.0	Long. (^o)	-78.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032806	Metagenome	179	Y
F042551	Metagenome	158	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310813_105336622	F032806	GGAG	MRARPVRPNIYLPVVRFGVADSDWFSVLLISCICYLAPVPFGITLLYVPLQMWTWLLATAGAIAFFNYIRIGRKPYWLQHQMKALFSNHRQYRFIPNSRKSKFDRLWITDQQEDGRSPPKTSVTISSFLLQHNNSMREECEEKWNSVWPTTN
Ga0310813_105336623	F042551	N/A	LKAAHGLVAVILSILLGVASVSAQTPSGQFFNGDSAQLGNSLRSVTFFLAAAMIIAGIIFIAVGIITSGLRESLSTWKFITGAACFAFGGVCAAIYAFSQGETVPVDNQF

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