NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310813_12177659

Scaffold Ga0310813_12177659


Overview

Basic Information
Taxon OID3300031716 Open in IMG/M
Scaffold IDGa0310813_12177659 Open in IMG/M
Source Dataset NameSoil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010064Metagenome / Metatranscriptome309N

Sequences

Protein IDFamilyRBSSequence
Ga0310813_121776591F010064N/AMKNNKTKIRLVIQKCVWSLSILGIVIGLAIATLTISPATAQGTQNLQFDVFIDANTIYFSGPPGPNPGTTFIVTGYIYPGGTLAGNPQVAPPNPIGEWTCRGTFTRNASEQRPEVFTIQEFYLPDDSTAIATEGIEHGLVGMDHRDMRATIGGTGMYQNAKGQSTEYRIGV
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