NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307396_10057565

Scaffold Ga0307396_10057565


Overview

Basic Information
Taxon OID3300031717 Open in IMG/M
Scaffold IDGa0307396_10057565 Open in IMG/M
Source Dataset NameMetatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-6 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1634
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Gonyaulacales → Lingulodiniaceae → Lingulodinium → Lingulodinium polyedra(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-60.9995Long. (o)-0.0007Alt. (m)Depth (m)35
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000234Metatranscriptome1506Y

Sequences

Protein IDFamilyRBSSequence
Ga0307396_100575651F000234GGAGGMLVGAAGVAALMGTAGAAKWAVSSSLAGLQGKEERIDIKPSFAACSKSGENCVSTGCCQVSGHTCFTKKGSVAQCNETCAPGVKGFTCGVVAHHSVPVETVLGQRLYCFSVYTKNTGSPKPSTELDLLTLQSKHGASIFACEQWDVFSDVVVPIGFGYETIKVEDTFGEFHQIKRKVTNSWVNWGTFYQVWLKVREVGKWETVDYTVKVDADAVFVPQRLRDYLGTNKGDSPHGLYFENCKNVQYGMFGNLEVISRTGTKVLTQYLENCHAEFAPCANDGCDWKFGAWGEDVFAQRCMDHHYVDKVEAFDMTTDGACESDRPEGEKKNKKWHAEDCSQVTSVTAHPFKKPKDYFKCLGEMTGQAYGV
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