NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10000002

Scaffold Ga0307474_10000002


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000002 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)326117
Total Scaffold Genes320 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)259 (80.94%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001632Metagenome / Metatranscriptome660Y
F011101Metagenome / Metatranscriptome295Y
F011236Metagenome / Metatranscriptome293Y
F017381Metagenome / Metatranscriptome241Y
F022025Metagenome / Metatranscriptome216Y
F025539Metagenome / Metatranscriptome201Y
F037839Metagenome / Metatranscriptome167Y
F071443Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_10000002119F037839AGGCGGMREPARHQVRRNEPNRNIEELNDDEIYAAIRYLEPDPRSASKQSDDTATTKENDDNTVVICVCLYIALLGCLAVFWLYLK
Ga0307474_10000002123F022025GGAGGMTPQISQAVDKHIESELDRLTYSAYLLTLDPGVAVSVVMTAIDGSLEEITTGPDLLERTVELALEQLRRQSRTEGDGESSAFDAELYGHSATSNAPTFQSLKDLSGNPILLLDSTSRIAFVLHHVLGYKLGEAAAKSQMDETEYRAQLRKAYLRLASFHFEGQVSGGKFIEEPALA
Ga0307474_10000002192F011101GGAMLVNTNRVQMPPMAQEAYVGLLEIVSNEKWKEYNMTYRAITFASAAFFVTSLALASDTWILDSSRSNARLFQGSSANSESVNTGVARVTGKVTLDTNDLDASFFDLSIYPADEDWGHALRPEGALHFNYVPDVADQTLLTFKSMRILRTGDGKLEVIGDLTLTRVERAIIATPTEAYAGPVYGDPVIHNETREITFLFPSESAAHLSGPLTSAMLHTKGVLEIVGAARVDRGEFPELLSAINETNWPAVVENKDCHIPSTVSEDYSGAVCTGILIAATRDRNCQVPASAGEDYSGSQCTPATGAQTTIVLDLKFLHKVPEPSVGMLSGSGEAR
Ga0307474_10000002196F025539AGGAGGMSSNVHTALSKNDWHPDLVHDLPSQCLQGDPSIDDPVNDTGFGPPCSDLQVSGEFAC
Ga0307474_10000002217F001632AGGAGVFRNRWKFVMACALFIAVPALAAHLKEQMAYCSYVIEQAQAQRDLLRTPVAAASITQPETGLPMQLIAGASVGLSGMKKAGLAMDAARTDCELYKAMTEAQQSIQYAQSSLEKEALRNRLALIDQASKSLDALMEQTAKTVEAQNATRLMLFALQTTKIRLDADRADTQSKITAHYTPPLSDKPLRQLVAEKQSSEGNEQKALDKLSRQNNWDVALSVGVHQQVNPVAQGAQPYGAVSLNYNFASVAIDKHLDHAVEAHDEWKKMQESDVVRSMEVLRQQLAESVSVQEAKLNSVQEESKQINRNLQLVINPDTSVALDFHNQLTAAQLLLEIETGDATFRIHRLQEYLAKNY
Ga0307474_1000000234F071443GAGVFGVLFSMLVVLALLNILGEFVMRVRLTRRASYDKIAWWRRGGDEVAANYEEVFLESRLPLFRRFVFWLLVTCACVLFFSMILWKSN
Ga0307474_1000000284F011236AGGMDGLSQLPAQPRAPRVHLADFTPAVLRFQDGQRATGQLQVLSVNGGLLALPGPIDRGSRVKLMFLTRTGAVLGAAEMLSPVTSTQQPFRFVSLPVDDRHRLRAAIQSSLNPDTAHRDAAEQKWMDKLRAAASCEKRPRSRLFKFGVGAVVLGIFCLGCALYLLQVHPLK
Ga0307474_1000000285F017381N/AMADFPQQRRKIRAPRVNLWGTVSATIQLENGRQLWAKTLRISITGGLLELATCLDESVVVGLTVHLGSRTVRGKVAMLFPMRATQGYLQPFRFTDLREEECLVLQTEIGERLRQAKPFAPGRSGFGFRPQNFLESS
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