NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10000003

Scaffold Ga0307474_10000003


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000003 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)283491
Total Scaffold Genes254 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)198 (77.95%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001353Metagenome / Metatranscriptome717Y
F003400Metagenome / Metatranscriptome489Y
F016582Metagenome / Metatranscriptome246Y
F017551Metagenome / Metatranscriptome240Y
F061071Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_10000003164F001353N/AMDPSAPSSKILYPEWQHEYLAALVEGDPKTLFERVTAAEAAIFNRLQAISKNPDSQAERRAIQDALASLRILQKEKLGFPDWEKK
Ga0307474_10000003204F017551AGGAMSSKTATWIIAAGTLMMFIGLCFLPGAFGGHPDADMLEIGACQFSLGALIVAAGLYAKARVLQIAIASGEPRKESATANQRVRGGCDLCGSEAPVVQCKIHQLHLCGSCLAQHYDVRSCAYVPTTRTANSKNGRKLAANARGA
Ga0307474_10000003209F016582GAGMQQASIQTELFVTLAEHYEQDPREFVRLPQQTVDSSFARVAVAELRNEGYVEEQVRGVVRLTLRGYNVYKSKPHPAA
Ga0307474_10000003218F061071AGGMTKDNLKNQKPALNYDRVSLASVRRNRRGKHHDLIQGIFQDLETLPVGSAIKLPLVSLDGITLANLRSAVHRASVSRGLGIETLSDEDNFYIWKGEK
Ga0307474_1000000382F003400N/AMRSDILPLCDKHYRTMEFLLAPFSVNYSVEFFRCTDKFCQRCFSESLGYVTPRRDEPPVVSPDQPCCEKHGRPMFISSLDRQRNVLRYVCPEPGCRETTLKG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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