 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031718 Open in IMG/M |
| Scaffold ID | Ga0307474_10000004 Open in IMG/M |
| Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 239778 |
| Total Scaffold Genes | 199 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 157 (78.89%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009102 | Metagenome / Metatranscriptome | 323 | Y |
| F011862 | Metagenome / Metatranscriptome | 286 | Y |
| F027340 | Metagenome / Metatranscriptome | 195 | Y |
| F049914 | Metagenome / Metatranscriptome | 146 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307474_10000004141 | F049914 | GAGG | MRKRRLSGGFICLGMLVFANLAVWAQASKDGVIAINGGRNTLLLRAPSQIFTPAVPPSSKLITIYSNLGRDKNVYNAIAGDGILGPDAGQPWPQSVGCGFRPKADHIVTEIQVGATHVQGTNTLVVSLNQDNNGIPGKVLHTWHFSGLPVFGSCCTLQTARYAQGIKVRKGKLYWVVLSPQKKFTDTYDVWNNNFSGLQGTFSNNMGSGWNSSYQVLGAFGIFGK |
| Ga0307474_10000004168 | F011862 | AGGAGG | MSDARNGRAFVGVLTVLFVLSAATELYPADKTSLELSGDSIIRIVTQIQRADYEGDRPTLKRLHDELTRIPGGNKLASRVLYWRGFALWRRAINGFNETPTPKDLEEDLTQAATDFKDAIALDPAFVEPKIGAGSSLGYLMYLHRKDPTRVQELLQQSSQLLKEAMATAPDNPRLLWVLGPIRWSSPPERGDGQEKAFESYNRGLESVRNQKRDASDPLEPSWGEPELLMSLAWSNLNRTTPDLNAAEQYARAALKMVPYWHYVRDILMPQIRAVQAKATKG |
| Ga0307474_10000004183 | F027340 | GGAG | MLRQMAVFAAAIVLALAILGLDVSNKPASTAGPWQVDTRHSSAKLTTDATTDYGKTKITVALGYGRVNGKVKIDDDPAKGSVDLQVYPATSMAPPIGEDGKFLSHWLENMSNHTLVCFHSKKVVRMPDGRLQATGELAVTRVDRNVEAASTEAYAGPVYGPPIVHRVSREGTFIFDLPAANGNGQNDSGIQASASTRVFGEDFPQLVKTVVNTYWPVLVQDQSCQTPAVGEAYSGTQCTGTFMMSPGLPEAPHAANAEDLPGPPNFNTIVGENLTILVQMHLVPKPTGEQAAARN |
| Ga0307474_1000000425 | F009102 | GGAG | MTYLYAAYIATWVIHVAYLGTLLRRYTRLRNEIAEFKGRVEEKN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |