NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10000008

Scaffold Ga0307474_10000008


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000008 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)211197
Total Scaffold Genes201 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)151 (75.12%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000526Metagenome / Metatranscriptome1049Y
F046504Metagenome / Metatranscriptome151Y
F051302Metagenome / Metatranscriptome144Y
F060654Metagenome / Metatranscriptome132N
F061074Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0307474_10000008150F046504GGAGMENLKQKLEKTLEEHQRESGLHMIGGRERLVARLLKVLEPSVHATGSADRTPSDEDGRCC
Ga0307474_10000008173F060654AGGAMRHKGVEYPELKGKTVTRVWFKDDDEFTALFLEFEDNTRVRFDLRAAVTFERAPEMCSIAPNGDLTDWSDLRIQRLAPHES
Ga0307474_10000008174F061074AGGAMASKRKKPIEQHLYCRGRKCRSCTWDSVHVSVDGPHPRYTKGHRGFYNGDIDAAIDDFLIVLKGEARRLLRDCAEQIPALKQFNLKFA
Ga0307474_1000000845F051302GGAMAYLAEHLSSLRHEITDLRNRNFLYLQQSEHSPVERTASIVRESRLVQIKQELSKMRNRPDDSAVWWGKSSKPERVV
Ga0307474_1000000860F000526AGGAGMDGNLVGLVAVIMIFGIPMAAMYTFYRVRKLRTEERMAALARGVDVPMQPELSEAARSRRSGILLVTGSLGYMLTFALIARAESDAWIAAAFGIIPLSVGLGFFLDSALIRRDLHA
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