NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10000231

Scaffold Ga0307474_10000231


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000231 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)41044
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (61.76%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001128Metagenome / Metatranscriptome769Y
F002346Metagenome / Metatranscriptome568Y
F012080Metagenome / Metatranscriptome284Y
F025102Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_1000023115F002346AGGMRLFDKLCAGALFILAIVYCLLVPRTYTGRIWIFGTGLALLFTAMLNLLRLRNGDGVQGLRLFCIAANLTMFVFVIALMASIGKSPTLQHPQVPLVAALLTAETTFSFRKKA
Ga0307474_1000023127F012080GGAGVSRPHDESEKERVWRVLSEAGLIDIPPDEFAERIKEAKRVVMGRLSELLEATTEIHQECESAAYSLATLKKLEGTVSRSGRRSSE
Ga0307474_1000023128F001128AGGTGGMRPTPKQAGTAANWPPEEGQIVTFRSLNGLSNGIVKEVRWGLVWRDFILDDGRVIPEHKILDHPEPPVWRRAAEVTQDEREAWERRLVSMAETGLDPRDQEQSFWAELNQYLAYTYLRFKQAGSKPPDPE
Ga0307474_1000023130F025102AGGAGMKKIAQIVLTAVALAGMYSAIPKSFAPVDNPGIGTEQMVLVADGSDPMPLCRGRACK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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