NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10000370

Scaffold Ga0307474_10000370


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10000370 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32654
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011102Metagenome / Metatranscriptome295Y
F019863Metagenome / Metatranscriptome227Y
F050511Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_100003703F011102N/AVSAALPAFHATFHSKSSPAPSRLSVTTQVTTSPEFCKLFLRQQLVGEGGVFLVEWRKLVCGLMIVILPTFVLPQDSGRAMLHDDGGVWLNGNPAPNSSAIFLHDLVQTQNRNWAKIDATGSTATIQPDTIVQFEGDELVLEHGGVQMITSVGMKVRVNCITVIPLTQDWNRYEVIDVNGRVKVAAHQNDVKIHYRLAATRTSKQAKFSDVTVHQGEQVTREERCGAPAKPVAELAATGTILSSPWAIGIGGAAVVALTCWALCRGDEPVSAAK
Ga0307474_1000037033F019863GAGGMSYSEARNHFEKGKNNTADKGIIEMLDGLKHLSHALEEDIRTLEQGIRDICEIQNKQVSTRPF
Ga0307474_1000037035F050511AGGGGGMANLENALQELRTERKQAQLHVEKLDQAISVIESLN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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