NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10002134

Scaffold Ga0307474_10002134


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10002134 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14251
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003278Metagenome / Metatranscriptome496Y
F004875Metagenome / Metatranscriptome420Y
F037839Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_1000213410F003278GGAMLKISLIDSPKQRRVIVEGKLIAAWAAELRNACQQASADLRGRELVVEMRHITTISLEGENVILDLMNSGIAVRGNGVFTELVVKDLSRRAHRNLRSK
Ga0307474_1000213414F004875GGAGMTQRLSRLALIGVLVLFSNFGFAQKAVTAKATIPFKFWAQDHEFQAGDYVFDNEVPGSASIHREGTNSGMGISIILYAVPDEKENPRVMFVHRDENYVLVEIWGVQDRYVVTAEYEHRGEVSDEQRQVPLTIVESRDR
Ga0307474_100021343F037839GGAGMRQQERLMLTNPEPDRNIEELSDDEVYAAIRYLDPDPRIANEQSDNTATATENDHTGVVICVCLYIAVFSSLAVCWVYLR
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Institute for Fundamental Biomedical Research
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