NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10114344

Scaffold Ga0307474_10114344


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10114344 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2023
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048424Metagenome / Metatranscriptome148Y
F102028Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_101143442F102028AGGAMSLNPYGTLGAGENPPGSPKHPWGKWPKINPETVAPLRDGRPDLYNYQPTRFVSKDEAKARGWKLFWTGEVCVTGHRAARYVSNSSVCTDCQRVEKGKVPVYGKGVPELEAARRRNYTQKNTAPVVGPPVPSTAEKRFLEKYAESKDFAAAAEALGRTESEFLAILSWNTTFRDAVNRLEESMGIGRTQQVTDDFDWTEDKQRVFLITYANTADMKQALRSVGATNVQFHKELSANSEFQRAFDDAAQVARAVFDHAASAAATKGDSRMLGRIAANLFPEKFGENLKMDLNVKQNLTLDQAHAQLTTILSRFNRQGLLSAAETDDESVVEAEYQLIESGGDLETTPDPEPESEDPGPDPNSDLVSGSE
Ga0307474_101143443F048424N/ALEAVAKRTHVLRDRVLVKILPYVHPTLATPGIEINKGVVIAVGYGRRQRRKVAFKQEISDGPPVLGPGGKVMQFAKSKLSGKTLWFEDGPETGAIIPMQVKPGDVVEFSFRNITLVDFDRVGFPGIGDLAFVWQKAIYSIDPDESLNECLMFQQSAGYDRKGNFMSGAEDWHRA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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