NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307474_10149963

Scaffold Ga0307474_10149963


Overview

Basic Information
Taxon OID3300031718 Open in IMG/M
Scaffold IDGa0307474_10149963 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1759
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014996Metagenome / Metatranscriptome258Y
F037832Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0307474_101499631F037832N/ALRNAVRPAIYAHFLLAEDQERAGQLAAECEDLLFLTRELLKAAGLAGILGAEPGPGGLDEDGGDRQAQLLGAYAEAGLLWAKVVGSTMALARALLDRGDRDAVWRLAGFLAEAGEDGAATDLKIGLGRAVWAMHRESLLDITSTTPPAAIGTAIDALRAVLLEVPEDYPDRNREVNRFLPPLAASVHAIMRAQEIAIPYGSRLEHIAAGGVAKYPDIVKLSLDEIAAEFEGLCNRPGNE
Ga0307474_101499633F014996AGGVTRSGSGVHADIDALKGFHEALVRFRHVQRSVTERSGDEIQITRASLAAKASHWQARLEQSQAEFDACRAGPGADCSGYARAVEQAGEWLEHIRRWQQRVDEAAGEFRGPADAFWDLLQNDLPRAESLLLALIADLQAARRVQAGAS
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