NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306917_10152048

Scaffold Ga0306917_10152048


Overview

Basic Information
Taxon OID3300031719 Open in IMG/M
Scaffold IDGa0306917_10152048 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1718
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002554Metagenome / Metatranscriptome549Y
F003995Metagenome / Metatranscriptome458Y
F032330Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0306917_101520482F002554N/AMAKVYIVSFRSNDDRRPSKFIVLADNMKSAINMAWEHGGTDFQSRFDKSTAQAQEMKEGALRVL
Ga0306917_101520483F032330GGAGMPDELFFLFIASSIGLWLIQLVTGWIDRHRESRRIQPGTVTERYRGHLILARAHQEPDTDGWSATPHIQFNEKNLTFRDVQLPRPTSHFPTKITAEKQAVKEAKLWIDERLRKAEKGFENVKCF
Ga0306917_101520484F003995AGGAGMQPMTRQEIQQKMDELARKYVETRDKEMPQELYQLARELEKLEKLEKQ
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