NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306917_10696684

Scaffold Ga0306917_10696684


Overview

Basic Information
Taxon OID3300031719 Open in IMG/M
Scaffold IDGa0306917_10696684 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)798
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000647Metagenome / Metatranscriptome961Y
F023158Metagenome / Metatranscriptome211Y

Sequences

Protein IDFamilyRBSSequence
Ga0306917_106966841F000647N/AREIRRTVFFASSAVPSTYSGNSMATPSGNPAGGPVGPRHRQQLNGEFIAALLRDFRHGGPKAIERVRRTQPAAYLKILALLVPREHKVEHSNALKNLTDEQLEAMIEYLTTSLEAQARGSVRVIEGTAEPAAAMAPAPKPKNRLMLEADTAVGPRQRMPKVPSPPDG
Ga0306917_106966842F023158GGAMPEVVLQGARVVAIIGELEPTGMAKHVWVDREWHLGGLPDTLDEAMEADGA
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