NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10000139

Scaffold Ga0307469_10000139


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10000139 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27908
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012500Metagenome / Metatranscriptome280Y
F016587Metagenome / Metatranscriptome246Y
F035890Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_1000013915F035890GGAMLLLLAGLVARAQDKGPAPKAPDRPGAEYSGMYSFLKEGEFVQVTVEDGGRVTGFVSRFGDQESDKGAFLDQFFKTGKLEGASLTFTTEIVHGTAYEFKGTISRGEGKKVGDEAYYQIKGTLMEKVTDANQKTSSRSREVTFKSFPAEAG
Ga0307469_100001392F012500N/AMFCLVSAAYGQQADFAIGFSTIHSAPVSNSQSQQQFPPVSLTGGLYPSFSGDVSIHKNLAVGGEITWRGGQGNYDLSQPYRPIFWDIDAFYLPKLAPKVQAELSAGIGAESTRFYTPFTICGNFSCTNYQTSTHFMGQFGAGLKLYARGGFFVRPEVHLYLVNNNVEYTSPYIVRYGASIGYTFGGGH
Ga0307469_1000013922F016587N/AMKKMLTVALLASACLIGCNKSSPSKAPARPDDVVQQKLKELAGSGATDCGRLDIKAANDQLSNASTCATKAAEKKQAFFIAYDMPGMSTGVAGNSGGQLFALQLQGSGTGAKLESGACPGALRVAPSGRLTCFIPGTMGLNATGADPHSGIPTTPGANPHGGGMGIPQPFDTPNTGSAPPPKKK
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