NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10000354

Scaffold Ga0307469_10000354


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10000354 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17174
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030030Metagenome / Metatranscriptome186Y
F042845Metagenome / Metatranscriptome157Y
F046962Metagenome / Metatranscriptome150Y
F061700Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_100003542F061700N/AMCDKCHRFFVISYEKNEKGEVVEIGHELDIRVKSSGVVRVDEGEQHRGFERTPPARKYEEETCW
Ga0307469_100003545F030030AGGAGLAKFIMSIGDNAYDILSNEARNRDVTVQQLLRAVVVPDWIKQNANGEPPIETTPHPIRSSVYGVDTSNSRMLVSPVARLRR
Ga0307469_100003546F042845AGGAGMETRKWKAFLRMNGETTVDSSPDILIEFKAMVEYLKSIGVGYSIVVQVEADQPEREPSQTLAMERNLPVDPELDS
Ga0307469_100003547F046962GGAMEEVANSGYPPETTNRTIPQDTMTDDQLRNLLAELISSSASLNVRVWLDGVYTDIENAGAHREWMKGREVYFKVEGKVDGQNSLEETSHRSD
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