NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10000594

Scaffold Ga0307469_10000594


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10000594 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13298
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000916Metagenome / Metatranscriptome835Y
F005205Metagenome / Metatranscriptome408N

Sequences

Protein IDFamilyRBSSequence
Ga0307469_1000059414F000916GAGMATLTQRNRTRSLEERYEMLRKTLAHYLLLQVGTFVTAAGFDAIAPAMNILTDMKANLKVQDIKSNGQGSTVQALSQNLADSMGETFDSDYEVEAGESSRTVKLDRCGCIESVVAQAEGYGLTKAQARSIFCGTCISSYKKAAEALDVGFKGRLRGDHGCSMSFSEK
Ga0307469_100005946F005205N/AMSTVNVKTALEGPKQVRAILSGGLGVFSSLLAIGWALWAYNFPSAVNVNSSQSQNLMLAQLVLAFVMLLGSGLMLARFTLPGGIINILGALSTFVIGVYFSTGIADSARSKDLTLLRLHFSGVYTGTVSLATDRIVSTFLILPVFPIAALLLISGLGALATYRSGKRDYTHR
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