NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10001330

Scaffold Ga0307469_10001330


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10001330 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9427
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008609Metagenome / Metatranscriptome330Y
F010607Metagenome / Metatranscriptome301N
F015844Metagenome / Metatranscriptome251N
F023559Metagenome / Metatranscriptome209N

Sequences

Protein IDFamilyRBSSequence
Ga0307469_1000133010F023559N/AMATLKKRIPKPDLSKYDPSPLYMYTEKDSLNRVTVLKETAKEIYLIAGRYSGVESDARLYTPLTDEEKGEIERNLRGSHKDALINHL
Ga0307469_1000133011F015844GAGMTETMYRHAISTAFKNWHTLAVAAVLYAVNVFLLSIGNDMIVRSSQSLEGWVILVVSGYLFIGAVYLVSATLTENSTLSESFPGVIDHFRTFIVGAIAYAIGYFLLFNVAPPLQSTQTLAAAVALIVGGAIYLVAILVAVAAAFVRPRK
Ga0307469_1000133012F008609GGAVKRSFLIVGIILLALGFAGYLVTSQTNLIGGRTHNIYPLGSIGLAVLGALIAVGGVMMSQAGAKSPNQFKCGKCGMTFGSQAALDQHSKDKHGMKAA
Ga0307469_100013308F010607GAGGMVKVDHYHVVARFARLFPDPAVFEDQDHLVERYLLQSGLPKEKAFYLYQPADEINPVDDSGKPAIASGAASFRFQGKNIMAEFMPNASLAMEYYDFGTGLSSEEHSRLWSKQRIGEMSFQLRDFRHETQGLNLTNVSELYHILKKQGQTTSLSSIELAKMPEDMFRLTMEYLKSQLRKSAEQDALEVEVYAAKDLSASEKSSLEKRLTRKSTGSTVYVILSKPEQLMKIESG
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Institute for Fundamental Biomedical Research
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