NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10001589

Scaffold Ga0307469_10001589


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10001589 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8829
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008873Metagenome / Metatranscriptome326Y
F011479Metagenome / Metatranscriptome290Y
F017116Metagenome242Y
F020766Metagenome / Metatranscriptome222Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_100015894F008873N/AMTEKKKEDEKTPAKLLPFVEPQLFVAVEEANRRLKEIMKVTRPTERLYKSIQRITEVSEMMLRRQDQLTKLFEPSENVRQYLERIRQLVEQLTRTKQNELPQISRTIIPQLEIEVSGYVEEFERALAEKEKEIEALKAELEALKSRTKN
Ga0307469_100015896F011479AGGVTSFDELVSQSVTETMSKILGTDTWKAINFFFDMQIIAREPEQFAALLDKVFGYTSIVLQKKIGETLLGKVGASQRTSSNFDLRQILRLAKAKFPRQALPDQLGP
Ga0307469_100015897F017116GGAMAYDIIDVFETFNLVLILAAFAVFTRLAFKGKSLGNFRFQLSIFLLIWVLSEIPHIAGSLGLISTAAYSDIGLYLHATSMGVFAFFVGWRSIKIATLHPNPPTGALAIPKEPPRGIKG
Ga0307469_100015898F020766AGCAGGMVDLVTGGIVLFAIMVAAGIIPLILAFRVKVRSLRILSLLLGLFAIIHGFYHLASGYEQEFLADAVFEPISLLLLVGLGAYYSRVGTA
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