NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10111949

Scaffold Ga0307469_10111949


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10111949 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1950
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025584Metagenome / Metatranscriptome201Y
F035065Metagenome / Metatranscriptome173Y
F037102Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0307469_101119493F025584GAGGVGDPRLDEPRRWGVLWIHQEAEELRVHHRATIPAGHARALVVTVLASGRVPPLQTTLFDLEDAAGRPILQRFWGTACPRDEVVYVILFINERCLVFALSG
Ga0307469_101119494F035065GGAGGMTDREVEAISHFLRHFGSFGCWQISVRRAEPKPRTPEDVGRFVLEILAAWRAEGLDVERLYKVATIAIHFEAYKLPGPICMPACCRPWGALEPACPPGPGRPLTRAQLQQALLRAVPIGPPPAPDAPFPDDLDEDLKRTGLAP
Ga0307469_101119495F037102AGGAGMGLTNRPARDQGRAMPEEARMNERTPEFTHQVLQPAMHQKLLLRAAELVAMGWTRGTAARDATGQKVRSTAPQATAWCVVGAVDRALYELWALDLYALLGLEVDAYDTASCPSEALRALRRPLQHVLGRRDLAHWNDHGCPGSAAAEQLLREAAATAARS
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