NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307469_10351010

Scaffold Ga0307469_10351010


Overview

Basic Information
Taxon OID3300031720 Open in IMG/M
Scaffold IDGa0307469_10351010 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1238
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005262Metagenome / Metatranscriptome406Y
F005616Metagenome / Metatranscriptome395N

Sequences

Protein IDFamilyRBSSequence
Ga0307469_103510102F005262AGGAMRPGFCSLLAIISLATPLAGQAAPGHVYWVGFYQALPGKAAAYNKALTDIADPVLDELVRRKQMISHVQLAQYTGAGENSNLVILEFPNWAALDTYEAKLEEASQVVLHKPWSEATAGFAELRRLVRLEIYTPVHDPVRR
Ga0307469_103510103F005616N/AMIPYGGESLRGEPQDFRIPRTGDRDLSFRGWLLSHAEERGGSPGLTHGMDIDIYLTIRLRLAAHLCRWSLREGEGLREEHRVAAHDSAAKLIEWLKHENAGRLDAPSKRAWVRACQVWPGLKSEAVERVD

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