Scaffold Ga0307469_10991568

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307469_10991568

Scaffold Ga0307469_10991568

Overview

Basic Information
Taxon OID	3300031720 Open in IMG/M
Scaffold ID	Ga0307469_10991568 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	784
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F049311	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307469_109915682	F049311	GGAG	MRIRVRAFVLIPNLLALNMVAGQVATPAPTPPLVGTWEAVTRSAGGLGSTISFESDNSMSYTLGAMVDMKYKRARDSLYIIDPANGINAFRIAILRDTLVMVNEGKEQRETRVSAPLKGADPVIGRWTYLHYTGVPAFEEYTPGGDFRLRVPIRTLQGTYVTMGDSAMFHLPGPGGGDRAVRFAVVGDTLQLTWNG

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