NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318500_10183501

Scaffold Ga0318500_10183501


Overview

Basic Information
Taxon OID3300031724 Open in IMG/M
Scaffold IDGa0318500_10183501 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)997
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001388Metagenome / Metatranscriptome708Y
F061154Metagenome132N

Sequences

Protein IDFamilyRBSSequence
Ga0318500_101835011F001388N/AALREERAGELRARGADMDWDQAVAYTLTQVTQALGEVPSGTQP
Ga0318500_101835012F061154AGGALLSYIRATIRMYRKLFALRTYRRRVVITLLAFFGATVTITQLILWISGVRVGTALAISLITLTPIGVAFALRVSLPKADISFRHDSATAPVRVLIGDIFAAADAVIVITMNRYFDTAPPWVSGDSLVSQLIQRGYADRPGELRSAILRELALGQESEQPVGEVVSISADKNTYLLLAVADRHEQARSSVAVDAVWLSLSRLWQYARLNNISGLRVPVIGSGFARAQVGRVPLLILLLTSYLTAAMEMPICGLEIV
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