NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318500_10332946

Scaffold Ga0318500_10332946


Overview

Basic Information
Taxon OID3300031724 Open in IMG/M
Scaffold IDGa0318500_10332946 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)747
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032177Metagenome / Metatranscriptome180Y
F097988Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0318500_103329461F032177N/ARRTMHAVLAVHWDEEWLLLDNLTMVMVNSLEATQYLPLIALDYQAMTTFAAGSPAPQEAPAAIQNISSVPKDLPSRSVAR
Ga0318500_103329462F097988N/AMATAAFLEDIMRSSFRTIVVSTLTLILSSTLASAAEVRVLSVGSTQIAAKAIATEFEKQTRNKVTFTIRPPFDIDKELAEKTFDAVILSVPAMDNHDEAGDLAPMSRVAL

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