NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316576_10014222

Scaffold Ga0316576_10014222


Overview

Basic Information
Taxon OID3300031727 Open in IMG/M
Scaffold IDGa0316576_10014222 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5314
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Salt Marsh Grasses In Alabama, United States

Source Dataset Sampling Location
Location NameUSA: Alabama
CoordinatesLat. (o)30.2619Long. (o)-88.2383Alt. (m)Depth (m)0 to .02
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085037Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0316576_100142223F085037AGGMASMVVLFVLVAALDAGSPTPPAAPTAGLRDAKAILADYAKAIGDESAWKRHKSVRIKREVVVRAMNFKSQEETRMLRSGKLYSRSSMPGMGTFRRGYDGRVAWSEDPINGLRVLKGAEADDVRLAAVWNSEWRLGKIYSPVKAVVPPDDAPNADSLECVQLAKPQGPPSIVCFDAKTHLRVWEKGVQASQGGQVPYVTQFSDWRTVDGVRVWYHEKVTVGPITMEGHVSRIIFDEPASPRLFSLPRKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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