Scaffold Ga0307397_10020960

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307397_10020960

Scaffold Ga0307397_10020960

Overview

Basic Information
Taxon OID	3300031734 Open in IMG/M
Scaffold ID	Ga0307397_10020960 Open in IMG/M
Source Dataset Name	Metatranscriptome of marine eukaryotic phytoplankton communities from Antarctic Ocean - PS103-7 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2039
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Southern Ocean
Coordinates	Lat. (^o)	-63.9989	Long. (^o)	0.064	Alt. (m)		Depth (m)	35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026010	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307397_100209602	F026010	AGGA	LVRDTDSPVTQGLVQLDAEINKGDGDNLSILFDTNVTRGALKNLVTDKPAPITVKLAQKSDVDNLSILFDSNVTRGALKNPVTDKPAPITVKLAQKGDADNLSSLFDSNVTRGALKNLVTDKPAPITVKLAQQ

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