Basic Information | |
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Taxon OID | 3300031740 Open in IMG/M |
Scaffold ID | Ga0307468_100173794 Open in IMG/M |
Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1420 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F017927 | Metagenome / Metatranscriptome | 238 | Y |
F043662 | Metagenome / Metatranscriptome | 156 | Y |
F058493 | Metagenome | 135 | Y |
F066055 | Metagenome / Metatranscriptome | 127 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307468_1001737941 | F017927 | GGAGG | MLGKLSIIGAFLMIPTALSAQMGGGINPGVHVGDAVNPGATVRGAVERGIPG |
Ga0307468_1001737942 | F066055 | GGAG | VPPTLEARTADRAIASLRKAIEELAAERPREARAMVVNAAGSLAALREMIEGQILKQPGMVK |
Ga0307468_1001737943 | F043662 | GAGG | LFGLMTVTSFINVKVSIYNDNATLFCLSWKHDCAHYHVWIDRHSYTIEADPTFQRRPTLYMTRPQGVRVGMDGYFRTRKLDARKHGIVDTVLAHAKRAGLFEAAIAKVKARERD |
Ga0307468_1001737945 | F058493 | N/A | MTKLKTWLDLALSPDVDWPPHQPVMLKELVAEARAID |
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