NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0306918_10011733

Scaffold Ga0306918_10011733


Overview

Basic Information
Taxon OID3300031744 Open in IMG/M
Scaffold IDGa0306918_10011733 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4995
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051044Metagenome144Y
F055353Metagenome138Y
F076731Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0306918_100117331F076731AGGLGAHLSEPDNVDRASQFEELRFAKGQQWYVATAAVTLLSAIFWIERSIRLNRPEKIIATVFIGTIAGFGICFLVKLQNHLKEVRLTLGYPNDLNPWWRGVDVLSVLIGVVALAALVVLYFLWSHHVSAASPA
Ga0306918_100117332F055353AGCAGGMTAWRYQLFISSSREPDADAYQRLQDQLNDLGQQGWELTAVTDAGDAKIFILKQPDEISIDPSAQA
Ga0306918_100117334F051044N/AMMRTIEFVYYLFWVGVLIGALRLVEVSPWTYRFALIFWPILIGESVWFFASYLPRRMGWR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.