NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0306918_10411708

Scaffold Ga0306918_10411708


Overview

Basic Information
Taxon OID3300031744 Open in IMG/M
Scaffold IDGa0306918_10411708 Open in IMG/M
Source Dataset NameLab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1054
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005602Metagenome / Metatranscriptome395Y
F086735Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0306918_104117081F005602GGAMANVFIGFGLLLIVLIAAAFLAYYFFPAAFPVFWRQGNVPNQGVVRRDWIATGRIDFATSTISEVTSNPDDHDQPAEFKLLVEERRIVESLAGNENLEVQWRLATLREAKAVVKHYHKYLSDHSLMKTVFDETPSLLPPGIGPDPISRPADNGTS
Ga0306918_104117083F086735GGAMCSEMASWEAEVQRLVLVLAVIATLLCCGSAIRAQVVICPQLPPSYPRGWELMVRYQCVIYGYGPSYYPPAYYRYPTAYPYQREQVHRR
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